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Dataset Information
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Dataset Name:
iPSC (Exp 1) - ALS, SMA and Control (unaffected) subject-derived iPSC lines - SWATH-MS

Dataset Description:
Defining the human iPSC proteome from 6 genetically diverse backgrounds

--Data Files in Package:
Level 4 log2 intensity iPSC extracted markers.xlsx

--Metadata Files In Package:
DatasetMetadata.txt
GeneralProteomicsExperimentalMetadata.txt
SWATH-DIA_ExperimentalMetadata.txt
SWATHDIA_Window_Table.xlsx
iPSC_Metadata.txt

--Processing Pipeline Specifications In Package:
ProcessingPipelineSpecifications.txt

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Center-specific Information
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Center Name:
NeuroLINCS

LINCS Dataset ID:
LDS-1581

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Assay Information
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Assay Overview:
Protein isolated from induced Pluripotnent Stem Cells (iPSC) cell lines was used to generate high-quality libraries for SWATH-MS, a data-independent acquisition method.  These lines were derived from ALS, SMA and Control (unaffected) individuals (three of each). Output files contain peptide lists and protein names.

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Date Updated:
2020-8-27

Date Retrieved from Center:
2020-8-19

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Metadata Information
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Metadata information regarding the entities used in the experiments is included in the accompanied metadata. A metadata file per entity category is included in the package. For example, the metadata for all the cell lines that were used in the dataset are included in the Cell_Lines_Metadata.txt file.
Descriptions for each metadata field can be found here: http://www.lincsproject.org/data/data-standards/
